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(n) EP 1 262 764 A1 

PATENT APPLICATION 

(51) IntClJ: G01N 21/77, G01N 33/50, 
G01N 21/64, B01L3/00 



Europaisches Patentamt 
European Patent Office 
Office europeen des brevets 



(12) EUROPEAN 

(43) Date of publication: 

04.12.2002 Bulletin 2002/49 

(21) Application number: 01401376.7 

(22) Date of filing: 25.05.2001 



(84) Designated Contracting States: 

AT BE CH CY DE DK ES Fl FR GB GR IE IT LI LU 
MC NL PTSETR 
Designated Extension States: 
AL LT LV MK RO SI 

(71) Applicant: CORNING INCORPORATED 
Corning, N.Y. 14831 (US) 

(72) Inventors: 

• Lemee, Valerie J. C. 

SP FR 02-12, Corning, NY 14831 (US) 



(54) 



(57) A system, method and device for the detection 
of reactions between biomolecules or cells and a sec- 
ond compound are disclosed. The invention utilizes a 
fluorescent material having a fluorescence that changes 
with temperature. The fluorescent material is associated 



• Pecheul,Marylene D. M. 

SP FR 02-12, Corning, NY 14831 (US) 

• Marque, Pascal 

SP FR 02-12, Corning, NY 14831 (US) 

• Root, David M. 

SP FR 02-12, Corning, NY 14831 (US) 

(74) Representative: Marchant, James Ian et al 
Elkington and Fife, 
Prospect House, 
8 Pembroke Road 
Sevenoaks, Kent TN13 1XR (GB) 



with a substrate, for example, a microarray chip or mi- 
croplate, preferably suitable for use in high-throughput 
screening of biomolecules or cells. Substrates contain- 
ing the fluorescent material also can be used to com- 
pensate for temperature variations in refractive index in 
optical sensors. 




Method and device for the detection of reactions and metabolic changes with 
temperature-sensitive fluorescent material 




Printed by Jouve. 75001 PARIS (FR) 



EP 1 262 764 A1 



Description 

FIELD OF THE INVENTION 

5 [0001] This invention relates to detection of chemical reactions and metabolic changes in biological materials using 
fluorescent materials. More particularly, the present invention relates to systems, devices and methods of detecting 
reactions involving chemicals, biomolecules and other compounds and metabolic changes in cells, the systems, meth- 
ods and devices utilizing a fluorescent material, the fluorescence of which depends on temperature. 

10 BACKGROUND OF THE INVENTION 

[0002] The drug discovery process is a multiple step process involving identification of disease targets, assay de- 
velopment and validation, high throughput primary screening of compound libraries, hit validation in secondary screens, 
lead optimization, Absorption Distribution Metabolism and Excretion (ADME) and toxicity in pre-clinical trials. This long 

15 process eventually leads to a drug candidate that enters clinical trial phases. The assay development and validation 
phase is used to optimize the labeling system and detection method to be used for a robust, low background and low 
variability screen. Standard labels are either radioactive elements or fluorescent/luminescent or absorbing compounds. 
High throughput screening of compound libraries requires automated parallel handling and processing of labeled bio- 
logical reagents and compound mixtures. Standard screens are performed using microarray chips, microfluidic chips, 

20 and microtiter plates (hereinafter "microplates") with 96, 384 or 1536 wells compatible with fluid handling equipment 
and detection instruments. Recent developments of Charge Coupled Device (CCD) based detection instruments and 
compound arraying techniques allow for screening compounds in formats having higher densities than standard mi- 
cropiates. 

[0003] Cell-based assays are often used in the drug discovery process. They are particularly useful when the drug 
25 target is a transmembrane receptor or an ion-channel. Scintillation proximity assays, as well as fluorescence assays 
have been designed to monitor the physiological state of the cells, for example, by monitoring the level of second 
messenger concentrations (e.g., cAMP, Na + , DAG, etc.). In some cases, a cell lysis step is required for the measure- 
ment. In other cases, the cells are transfected with a fluorescent protein, the fluorescent properties of which depend 
on the concentration of a second messenger. High content screens also exist in which labeled molecules are used to 
30 visualize receptor endocytosis, recycling and intracellular trafficking of messenger biomolecules, providing additional 
information on the physiological effects cause by receptor/ligand binding. 

[0004] It is advantageous to monitor the cell physiological state without using time consuming and labor intensive 
labeling steps such as genetic engineering or even perfusion. An effective way of performing such assays is by meas- 
uring acidification rates of the medium in which cells are suspended (J.C. Owicki, J. Wallace Parce, 'Biosensors Based 

35 on the Energy Metabolism of Living Cells: The Physical Chemistry and Cell Biology of Extracellular Acidification, Bio- 
sensors & Bioelectronics, 1 992, 7, 255-272). Another way of performing such assays involves using a microphysiometer 
that uses highly sensitive pH sensors, which is available from Molecular Devices Corp., Sunnyvale, CA. Still another 
way of monitoring the physiological state of cultured cells is by measuring the heat flow using a calorimetric technique. 
However, none of these label-free technologies is compatible with the requirement of high throughput for screening 

40 thousands of compounds from large chemical libraries. 

[0005] Imaging infrared thermography is another technology that is used to monitor physiological and molecular 
events that elicit a thermogenic response in animals, plants, tissues, cells and cell-free systems. This method can be 
used for screening drug candidates. Whereas this method can provide throughput, the detection principle is difficult to 
master because it cannot easily produce absolute temperature measurements. Moreover, besides the performance of 

45 the detector used for imaging infrared thermography, temperature sensitivity is limited by the overall system noise. 
Temperature sensitivity also depends on the materials used and on the emissive and reflective properties of the last 
interface between the imaged object and air in front of the detector. 

[0006] There are also numerous methods of optically monitoring biological interactions and/or chemical reactions 
based on the measurement of refractive index. Besides standard refractive index-based methods, such methods in- 

50 elude evanescent wave-based methods using for example, surface plasmon resonance or optical resonant structures 
such as grating couplers and resonant mirrors. For example, United States Patent Number 5,738,825, the entire con- 
tents of which are incorporated herein by reference, describes an optical biosensor including a detection cell including 
a transparent base plate and a sample plate on the base plate. The sample plate has a matrix of wells to receive a 
sample, and the base plate includes a diffraction grating and a waveguiding film to incouple incident light into the 

55 waveguiding film adjacent the bottom of the well structure. The incoupled light field generates a diffracted light field to 
enable detection of a change in the effective refractive index of the waveguiding film. 

[0007] In the optical detection methods described above, the biological interactions monitored are performed in a 
liquid medium, typically an aqueous medium, in contact with the sensing area. One limitation of these optical detection 



2 



EP 1 262 764 A1 



methods is that the refractive index of the sensing structure may vary with temperature. 

[0008] Another limitation is that there may be refractive index variations among various locations of the sensing 
structure. For example, when the sensing structure is a microplate containing a plurality of wells (e.g., 6, 24, 96 or 384 
wells), there can be temperature variations in different wells of the same microplate. This temperature variation in 

5 different wells may be 3 °C or higher. In addition, for systems that monitor temperature in a liquid medium, the variation 
of refractive index related to the biological event is further masked by the refractive index variations of the liquid medium 
itself. Different volumes of liquids in different wells affect the path length of the optical signal, leading to further signal 
variations in optical detection systems. This difference in volume can be due to the fact that a different volume of liquid 
has been dispensed in an individual well, or due to evaporation of the liquid from the wells. These well-to-well volume 

10 differences either generate signal variations or must be compensated by some other means. One commercially avail- 
able detector available from Molecular Devices, Sunnyvale, California corrects for well volume differences. However, 
it would be advantageous and less complicated if a system did not require corrections in the volume of liquid in each 
well to simply the analysis of samples in microplates. Furthermore, there is no known method or apparatus that corrects 
for refractive index changes due to temperature changes in the local sensing area. 

15 [0009] Biological interactions monitored by the methods referenced above typically translate in refractive index var- 
iations ranging from 10 -2 down to 10 5 and lower. Therefore, the measurements must be performed in an environment 
in which temperature is rigorously controlled, preferably with temperature variations lower than 0.1 °C to preserve 
accuracy and sensitivity of the measurement. 

[001 0] There is a need to provide devices, methods and systems capable of performing fast and reliable high through- 
20 put screening of cells and biomolecules. It would be desirable to perform the high throughput screening using standard 
instrumentation and a relatively simple method, which would facilitate screening drug candidates for their interaction 
with another compound. In addition, for devices, methods and systems that utilize changes in refractive index to monitor 
metabolic changes in cells and interactions between and among biomolecules, it would be useful to provide the capa- 
bility to monitor for and compensate for temperature-induced changes in refractive index. 

25 

SUMMARY OF INVENTION 

[0011] Accordingly, the present invention generally provides methods, devices and systems for assaying samples, 
particularly samples including biomolecules or cells. One aspect of the invention involves a substrate, for example, a 

30 microplate for assaying samples including a frame forming sidewalls of at least one well and a bottom portion that 
forms a bottom of at least one well. According to this aspect, the bottom portion includes a fluorescent material in 
thermal communication with the at least one well. In a preferred aspect, the fluorescence of the fluorescent material 
changes as the temperature of the at least one well changes. Desirably, the fluorescent material is operative to produce 
a change in fluorescence to detect a chemical reaction, a biomolecular reaction, or a metabolic response of a cell. 

35 [0012] A chemical reaction could simply involve detecting whether two different reactants produce an endothermic 
or exothermic reaction, such as the mixture of potassium hydroxide and water. An example of a biomolecular reaction 
is the binding of a biomolecule to another compound. Such binding typically results in a metabolic change in a biomol- 
ecule, which produces either a positive or negative heat of reaction. A metabolic response of a cell may be produced, 
for example, when a cell or cell fragment is contacted with a serum, which can be detected by monitoring the temper- 

40 ature of the cell to determine if there is a change in temperature. By monitoring the fluorescence of a fluorescent 
material having a temperature dependent fluorescence, the presence or absence of a reaction or metabolic change 
can be detected on a sample substrate such as a microarray of biomolecules or cells or a microplate well that incor- 
porates such a fluorescent material. 

[0013] According to one aspect of the invention, the fluorescent material is in the form of a film forming a layer 
45 adjacent the bottom portion of the substrate. Preferably, according to this aspect, the film has a thickness less than 
about 50 microns. In another aspect, in which the substrate is a microplate, the bottom portion of the microplate has 
a bottom surface, and the layer is adjacent the bottom surface, preferably the surface contacting a fluid contained in 
the well. In still another aspect of the invention, the fluorescent material is embedded in the bottom portion of the 
substrate. According to another aspect of the invention, the fluorescent material includes a rare-earth chelate. A par- 
50 ticularly preferred rare earth chelate is EuTTA. Other preferred fluorescent materials include Rhodamine B, Erythrosin 
B or terthiophene. Other potential fluorescent materials that may be used according to the present invention, include, 
but are not limited to, EuFOD, EuTFC, TbFOD, EuBA, EuTHD, EuHFC, EuDBM, EuTA, EuTFA, EuDCM, TTED, TbTTA, 
TbTFA, TbBA, TbTHD, TbAA, and combinations thereof. 

[001 4] Another aspect of the invention relates to a substrate including a biomolecule, a cell or a cell fragment bound 
55 to the surface of the substrate and a fluorescent material in thermal communication with a surface of the substrate. 
The fluorescent material has a temperature dependent fluorescence. Preferably, the substrate includes a microarray 
of biomolecules, cells, or cell fragments on a surface thereof. 

[0015] Another aspect of the invention involves a method of detecting a chemical reaction, a biomolecular reaction 



3 



EP 1 262 764 A1 



or a metabolic change in a cell. The method includes providing a reaction substrate such as a microplate or a microarray 
chip including a fluorescent material. According to this aspect, the fluorescence of the fluorescent material changes 
as the temperature of the fluorescent material changes. The method further includes placing a chemical, a biomolecule 
or a cell in reactive contact in or on the reaction substrate and monitoring the fluorescence of the fluorescent material. 

5 [0016] As noted above, when two chemicals react, or when a biomolecule and a second compound react, such as 
when a target molecule and a receptor bind, or when there is a metabolic change in a cell, a positive or negative thermal 
energy is created. This thermal energy change can be detected by monitoring fluorescence of a material having a 
fluorescence that changes with changing temperature. Thus, according to another aspect of the invention, the method 
may further include correlating a fluorescence reading with chemical or biomolecular reaction or a metabolic change 

io in a cell by, for example, determining the change in temperature based on the change in fluorescence. 

[0017] The present invention further provides a method of screening biomolecular or cellular assays. According to 
this aspect of the invention, the method involves providing biomolecules or cells in an array of locations, such as in a 
microplate or a microarray chip used for high throughput screening of biomolecules or cells. This aspect further involves 
placing a compound in reactive contact with the biomolecules or cells in at least one of the locations and detecting the 

15 temperature change in the at least of one of the locations by detecting the change in fluorescence of at least one of 
the locations. Preferably, at least one of the array of locations contains a fluorescent material, the fluorescence of which 
changes with temperature. 

[0018] Another aspect of the invention relates to a system for high throughput screening of biomolecules or cells. 
The system includes a sample holder including an array of locations, the sample holder including a fluorescent material, 

20 the fluorescence of which changes with temperature. The system further involves providing a structure, method or 
device for contacting the biomolecules or cells with a compound in at least one of the array of locations. The system 
also includes a measurement device, for example, a fluorescence microthermal imaging device, for detecting the 
change in fluorescence of the fluorescent material as the temperature in at least one of the locations changes. 
[0019] Another aspect of the invention relates to an optical sensing system including a substrate in contact with a 

25 fluid containing a biomolecule or a cell, a waveguide associated with the substrate, a light source, a light detector and 
a fluorescent material, the fluorescence of which changes with changing temperature. According to this aspect of the 
invention, the waveguide may include one or more planar waveguides, optical fibers, grating structures, or combinations 
thereof. The optical sensing system may further include a processor for determining temperature changes in accord- 
ance with the changing in fluorescence of the fluorescent material. In a preferred aspect, the processor is operative to 

30 receive an optical signal and correlate changes in temperature with changes in the refractive index of the substrate 
and/or the fluid. Preferably, the processor is operative to adjust the optical signal in accordance with the correlated 
change in refractive index of the fluid and/or the substrate to provide a compensated optical signal for the temperature 
dependent refractive index change of the substrate or the fluid. 

[0020] Still another aspect of the invention relates to a method for analyzing substances proximate a sensing area 
35 of a surface. The method includes the steps of detecting a light signal generated proximate the sensing area, measuring 
the temperature proximate the sensing area, measuring the refractive index of the sensing area, and determining the 
change in refractive index of the sensing area due to the change in temperature and adjusting the light signal in ac- 
cordance with the change in refractive index. According to this aspect, the sensing area may include a substrate and 
a fluid containing a cell or a biomolecule in contact with the substrate. A suitable substrate may include a microplate, 
40 a microarray chip or a microfluidic chip. Preferably, a fluorescent material having a temperature-dependent fluorescence 
is proximate the sensing area. 

[0021 ] The invention provides a relatively simple and flexible method using standard instrumentation to detect chem- 
ical reactions, biomolecular reactions and metabolic changes in a cell, which facilitates high throughput screening of 
biomolecules. Additional advantages of the invention will be set forth in the following detailed description. It is to be 
45 understood that both the foregoing general description and the following detailed description are exemplary and are 
intended to provide further explanation of the invention as claimed. 

BRIEF DESCRIPTION OF THE DRAWINGS 

50 [0022] 

FIGS. 1A-1C show microplate structures having a fluorescent material associated with the microplates according 
to the invention; 

FIGS. 2A-2B show schematic representations of systems for monitoring the change in temperature in a sample 
55 holder having an array of locations containing biomolecules; 

FIG. 2C shows a schematic representation of a system for monitoring the change in temperature in a sample 
holder having an array of locations containing biomolecules and correlating the changes in temperature with re- 
fractive index change; 



4 



EP 1 262 764 A1 



FIG. 3 is graph showing the absorption and emission spectra of a EuTTA/PMMA film on a microplate; 
FIG. 4 is a graph showing the temperature dependence of the emission at 614 nm of a EuTTA/PMMA film; 
FIG. 5 is a graph showing the variation of fluorescence signal with varying temperature over time; 
FIG. 6 is a graph showing the variation of refractive index with changing temperature for water; 
5 FIG. 7 is a graph showing temperature dependence of the emission at 440 nm of a terthiophene/PMMA film; 

FIG. 8 is a graph showing the change in fluorescence of EuTTA/PMMA film in coated microplate well containing 
KOH upon dilution with water versus time; and 

FIG. 9 is a graph showing the change in fluorescence of EuTTA/PMMA film in coated microplate well containing 
Kl upon dilution with water versus time 

10 

DETAILED DESCRIPTION 



[0023] The invention relates to assay methods, devices and systems for monitoring biological or chemical interac- 
tions, by providing means to monitor the temperature in at least one location in an array of locations. Additionally, the 

15 invention is compatible with optical detection principles known in the art such as fluorescence intensity, fluorescence 
anisotropy, fluorescence energy transfer, time resolved fluorescence, luminescence and combinations thereof, which 
may be used in the determination of interaction characteristics that do not have an effect on temperature of a location. 
According to the present invention, the interactions between and among chemicals, cells and biomolecules, can be 
detected by monitoring the temperature of at least one, but preferably more than one location in real time. Such tem- 

20 perature monitoring provides the ability to detect and measure those interactions between biomolecules and a second 
compound associated with heat generation or consumption. 

[0024] A preferred aspect of the invention utilizes a substrate having a fluorescent material associated with the sub- 
strate. As used herein, the term "substrate" refers to a sample holder or container suitable for use in the measurement 
of interaction between biomolecules in an array of locations. Such as substrate, can include, for example, a microf luidics 
25 chip, a microplate or a microarray chip suitable for use in high throughput screening of biomolecules. The fluorescent 
material has a fluorescence that changes with changing temperature. 

[0025] The fluorescent material may be associated with a substrate in a variety of ways. According to one aspect of 
the invention, the fluorescent material may be mixed with a solvent and applied to the substrate by spraying, dipping, 
coating, brushing and other methods that can form a uniform and reproducible coating on a substrate, which can be 
30 made from a variety of materials. The fluorescent material may be part of a composite material for optimum heat 
capacity and thermal conductivity. Structured composites can also be used to induce anisotropy in thermal conductivity 
to improve the heat transfer between the sample and the temperature sensitive material. 

[0026] Alternatively, the fluorescent material can be manufactured in the form of a sheet or a film, which can be 
placed in contact with the substrate. Another way of associating the fluorescent material may be by incorporating the 

35 material into the structure of the substrate. For example, the fluorescent material could be impregnated into the material 
used to manufacture the substrate. Such impregnation methods are known in the art of manufacturing substrates such 
as microplates made from polymeric materials. As one example, a dye compound including the fluorescent material 
could be dispersed in a matrix of the material used to make the substrate. The matrix could be an organic matrix such 
as a polymeric material or an inorganic matrix made of solgel materials. The fluorescent material would not necessarily 

40 have to be incorporated into the entire structure of the substrate, and preferably, only a portion of the substrate would 
have the fluorescent material incorporated therein. For example, if the substrate is a microplate, it may be desirable 
for only the bottom portion of the microplate to have the fluorescent material incorporated therein. Alternatively, a 
temperature sensitive film can be made by forming a thin film of a matrix material and a fluorescent die using techniques 
such as casting, rolling, extruding and the like. The particular means of associating the fluorescent material with the 

45 substrate will depend at least upon the type of substrate desired and the type of material used to manufacture the 
substrate. Such substrate materials include, but are not limited to glass, quartz, silica, ceramics, metals, polymeric 
materials, and combinations thereof. 

[0027] According to the present invention, the fluorescent properties of the fluorescent material associated with the 
substrate depend on temperature. Temperature dependent properties of the fluorescent coating or film can include the 
so emission intensity at a given wavelength or over a range of wavelengths or the spectral characteristics of the emitted 
light. 

[0028] Fluorescent dye compounds exhibiting high temperature dependence of their fluorescent properties are 
known in the art. For example, Europium (III) Thenoyltrifluoroacetonate trihydrate (EuTTA) shows a decrease of fluo- 
rescence intensity with increasing temperature. Alternatively, some compounds exhibit the reverse effect with increas- 
55 ing fluorescence intensity when temperature increases. The fluorescent layer or film can be made essentially trans- 
parent except for the portion of the spectrum where the fluorescent material is light absorbing. It will be understood, 
that a variety of fluorescent materials may be used in accordance with the present invention. EuTTA is a particularly 
preferred material. Other preferred materials include Rhodamine B, erythrosine B or terthiophene. Examples of other 



5 



EP 1 262 764 A1 



candidate materials that may be used in accordance with the invention include, but are not limited to, EuFOD, EuTFC, 
TbFOD, EuBA, EuTHD, EuHFC, EuDBM, EuTA, EuTFA, EuDCM, TTED, TbTTA, TbTFA, TbBA, TbTHD, TbAA, and 
combinations thereof. 

[0029] The thickness and the concentration of luminescent dye of the temperature sensitive coating or film have an 
5 influence on the temperature sensitivity of the coating or film. In order to optimally detect the heat generation or con- 
sumption produced by the reaction in a sample, the heat capacity and thermal conductivity of the materials (coating 
and substrate or film) should be optimized. Therefore, the overall thickness of the temperature sensitive part of the 
substrate, such as a microplate or microarray chip, in thermal communication with the sample (e.g., bottom of the well 
+ coating or film) are preferably thin (on the order of a fifty micrometers or less). For a given coating or film thickness, 
10 the concentration of the dye is preferably adjusted at the upper limit where absorption versus concentration relationship 
starts to depart from linearity. 

[0030] Preferably, according to the present invention, microplates having thin portions at the bottom of each well are 
used. The thin bottom portion of a substrate can include, but is not limited to transparent polymers, polystyrene, poly- 
propylene, UV transparent film, glass, metal and combinations thereof. It may be desirable to include a metal film in 

15 the bottom portion of the substrate such as aluminum foil because metal films have high thermal conductivity. 

[0031] It will be appreciated that the fluorescent material can be positioned in a variety of locations with respect to 
a substrate. For example, as shown in FIG. 1 A, a microplate 10 is shown having a bottom portion 12 having a bottom 
surface 13. A fluorescent film 14 is positioned on the bottom surface of the bottom portion of the microplate. In an 
alternative embodiment shown in FIG. 1 A, the microplate 10 having a bottom portion 12 includes a fluorescent film 14 

20 located between microplate wells 16 and the bottom portion 12. In still another embodiment microplate 10 can include 
a bottom portion 12 incorporating the fluorescent material. As discussed above, such incorporation can involve im- 
pregnating the material used to make the bottom portion of the microplate, or alternatively, the bottom portion could 
be doped or coated with the fluorescent material. 

[0032] In embodiments in which the substrate is a microplate, the fluorescent material can form continuous layer 
25 over the entire bottom portion of the substrate used to close wells or the fluorescent material may be associated with 
individual wells by coating or doping the individual wells with the fluorescent material. 

[0033] A wide variety of fluorometers and luminometers are used in biological assays or high-throughput screening 
of drug compounds by end-point or real-time reading of microtiter plates. FIGS. 2A and 2B show schematics of an 
exemplary temperature monitoring system according to the invention. FIG. 2A illustrates a setup including a microplate 

30 20 having a fluorescent coating 21 utilizing a light source 22 that produces a light beam 23 directed at the fluorescent 
material 21 associated with the microplate 20. A detector 24 detects the light emitted by the fluorescent material as- 
sociated with the microplate 20. A processor associated with a central processing unit (not shown) correlates the 
fluorescence with a temperature reading and provides a temperature indication in the wells of the microplate. FIG. 2A 
shows a setup in which the light source and the detector are positioned above the microplate wells. FIG. 2B shows a 

35 setup in which the light source 22 and the detector 24 are positioned below the microplate wells. It will be understood 
that the invention is not limited to a particular detector and light source configuration, and other configurations are 
within the scope of the invention. Additionally, while FIGS. 2A and 2B show a microplate, it will be understood that any 
suitable substrate for chemical or biological analysis can be utilized and incorporate a fluorescent material according 
to the present invention. Accordingly, the substrate could be a cuvette, a microarray, a microf luidics device or any other 

to suitable substrate for processing chemical and biological materials. 

[0034] According to the present invention, a substrate having a fluorescent material is used in such instruments by 
interposing a portion of the substrate incorporating the fluorescent material with an excitation beam and by detecting 
the emitted light at a particular wavelength or over a range of wavelengths. The emitted light property, for example, 
intensity at peak emission wavelength, provides a direct measure of the temperature of the coating or film at the bottom 

45 location being measured. This temperature can then be correlated to determine whether a biomolecule has reacted 
with a compound to create a positive or negative heat of reaction. 

[0035] The invention is particularly useful for performing cell-based assays for detecting and monitoring metabolic 
changes induced by chemical or biochemical stimuli in cells. For example, if a microplate having a bottom portion 
including a fluorescent layer is utilized in accordance with the present invention, cells may be dispensed in each well 

50 with a volume of culture or nutritive medium. After the measurement instrument is thermally equilibrated, the temper- 
ature in at least one microplate well is real-time monitored by measuring the optical response of the temperature 
sensitive film or coating. By dispensing and mixing different compounds in each well and monitoring the temperature, 
it is possible to identify compounds that have an effect on thermogenic processes of the cells by impacting their me- 
tabolism. This protocol can be used, for example, to identify agonists and antagonists of therapeutically important 

55 membrane receptors such as G-protein coupled receptors, tyrosine kinase receptors, or nuclear receptors, inhibitors 
of enzymatic reactions and the like. 

[0036] It is also within the scope of the invention to utilize a high density microarray chips for high throughput screening 
of biomolecules using an imaging system. As used herein, the term biomolecule includes a variety of biological mate- 



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EP 1 262 764 A1 



rials, including, but not limited to amino acids such as DNA and RNA, peptides, proteins, oligonucleotides, lipids, or 
portions of cells. As noted above, because a typical target for drug action is with and within the cells of the body, cells 
themselves can provide a useful screening tool in drug discovery when combined with sensitive detection reagents. It 
thus would be useful to have a high throughput, high content screening device to provide high content spatial information 

5 at the cellular and subcellular level as well as temporal information about changes in physiological, biochemical and 
molecular activities. For example, if the chip substrate having a portion including a fluorescent layer or film is utilized 
in accordance with the present invention, cells may be dispersed and attached to the substrate in a high spatial density 
array. The optical response of the temperature sensitive coating or film can be measured using an imaging fluorometer 
including a charge coupled device, allowing multiplexed detection of the thermogenic effects of multiple compounds 

10 on identical cells or biomolecules. Alternatively, multiplexed detection of the thermogenic effects of the same com- 
pounds on different cells or biomolecules can be performed. 

[0037] Further modifications of the invention could include combining temperature monitoring with another meas- 
urement such as time resolved fluorescence to provide additional characterization of the biological system preferably 
in the same instrument used to monitor the temperature. 

15 [0038] Another aspect of the invention relates to compensating for temperature variations by using a fluorescent 
material having temperature dependent optical properties. Preferably, the fluorescent coating having temperature de- 
pendent optical properties is positioned proximate to the sensing area and is used to monitor refractive index changes 
associated with the biological or chemical samples. The temperature compensation system and method involves the 
measurement of the luminescent property of the coating that in turn gives a measure of the local temperature of the 

20 sensing area where the refractive index is being measured. Refractive index variations of the sensing area, which may 
include the substrate and/or the fluid containing the biological or chemical sample, can be calculated and compensated 
for in real time by adjusting for the local temperature contribution to the refractive index variations of the sensing area. 
In other words, if the refractive index variation over a temperature range of the substrate and the fluid are known, the 
variation in refractive index can be compensated for by adjusting the optical signal obtained for these variations. 

25 [0039] For example, the temperature dependence of the refractive index of water, which is routinely used for chemical 
and biological processing, is illustrated in FIG. 6. The variation of the refractive index of water with temperature is thus 
described by the following: 

30 An/AT = -(4X10" 5) -(2X10' 6 )T (1) 

at about 20 °C, An/AT = - 8 X 10' 5 degree" 1 (2) 

35 

at about 40 °C, An/AT = - 1 .2 X 10" 4 degree" 1 (3) 

where n is the refractive index and T is the temperature. The system and the method of the present invention may be 
capable of compensating for variations of refractive index produced by temperature variations in an aqueous medium 
40 as low as 2.4 X 10" 6 at 20 °C (equation 2) and 3.6 X 10 6 at 40 °C (equation 3). 

[0040] The luminescent material which may be in the form of a layer on a surface of a substrate or embedded in the 
material forming the substrate according to the invention can be used advantageously in microplates, microarray chips, 
microfluidic devices and microbioanalytical devices where temperature of fluids is monitored during device operation 
or for detection purposes. For example, the temperature of nucleic acid samples undergoing PCR reaction or hybrid- 
ization could be monitored in real time. 

[0041] An example of an embodiment in which temperature and refractive index are monitored in real time is shown 
in FIG. 2C. As shown in FIG. 2C, a substrate 40, which in the embodiment shown is a microplate containing a number 
of wells 52, is in contact with a fluid 50 containing biomolecules, chemical or cells. The substrate 40 includes temper- 
ature dependent fluorescent material 41 in association with the substrate. As in the earlier described embodiments 
shown in FIGS. 2A and 2B, the fluorescent material 41 may be in the form of a film or layer, or it may be embedded 
into the material that forms the substrate 40. The substrate may include a sensing area 54, which in the embodiment 
shown in FIG. 2C is in the wells. It will be appreciated that the sensing area 54 is the area proximate to where the 
chemical reaction, biological reaction or metabolic change of a cell occurs. According to this aspect of the invention, 
a waveguide 56, which may be in the form of an optical fiber, a planar waveguide, a waveguiding film, a grating, a 
mirror, an interferometer, or other appropriate waveguiding structure is in association with the substrate. In the embod- 
iment shown in FIG. 2C, the waveguide 56 is a grating. The waveguide may also include a combination of waveguiding 
structures. For example, the waveguide may include a waveguiding film and a grating in combination as disclosed in 



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EP 1 262 764 A1 



United States Patent Number 5,738,825, the entire specification of which is incorporated herein by reference. As shown 
in United States Patent Number 5,738,825, a waveguiding film and a separate diffraction grating are associated with 
each individual well in a microplate. Appropriate waveguiding films include, but are not limited to metal oxide materials 
such as silica, titania, titania-silica, alumina, and other suitable waveguiding materials. 

5 [0042] Still referring to FIG. 2C, a light source 42 directs a light beam 43 toward the sensing area 54. Waveguide 56 
directs the light beam towards detector 44 generated proximate the sensing area 54. A processor 58 in communication 
with the detector is associated with a central processing unit (not shown). The detector 44 will read the fluorescence 
generated by the fluorescent material proximate the sensing area 54, and the processor 58 determines temperature 
changes based on the fluorescence signal, which may, for example, be an increase or decrease in fluorescent intensity. 

w [0043] According to another aspect of the invention, the detector 44, or a separate detector (not shown) , may measure 
the refractive index of the sensing area, which may include the fluid and the substrate surface. The processor 58 (or 
a separate processor) is operative to adjust the refractive index reading based on the change in temperature in the 
sensing area. For example, if the refractive index of the substrate material and the fluid are known over a temperature 
range, this information can be used to compensate the change in refractive index for the change in temperature and 

is provide an compensated or corrected reading of the refractive index proximate the sensing area. 

[0044] It will be understood, of course, that the temperature dependent fluorescent materials of the present invention 
can be utilized to correct a variety of temperature dependent measurements. Accordingly, the invention is not intended 
to be limited to the correction of measurements of refractive index. For example, the temperature dependent fluorescent 
materials can be utilized to compensate temperature variations in Mach-Zehnder interferometers and other interference 

20 structures such as photon sieves. Mach-Zehnder interferometers are well known. One type of photon sieve is described 
in United States Patent Number 5,272,332, the entire contents of which are incorporated herein by reference. Briefly, 
the photon sieve describe in United States Patent Number 5,272,232 can act a laser discrimination filter based on 
temporal coherence. The structure comprises a multilayer device wherein the optical thickness of each layer is greater 
than the coherence length of the ambient light, but still much smaller than the coherence length of the laser light of 

25 interest. The spectral response of the photon sieve described in United States Patent Number 5,272,232 becomes 
dependent on the degree of temporal coherence of the incident light. If white light strikes the filter, multi-beam inter- 
ference will not occur because of its short coherence length. Thus, the photon sieve described in United States Patent 
Number 5,272,232 acts like a stack of partially reflecting mirrors. If the laser light strikes the filter, multi-beam interfer- 
ence will still take place because of the long coherence length of the laser light. This causes the device to have different 

30 transmitting characteristics for laser light and white light. It will be understood, of course, that other photon sieve struc- 
tures can be used in accordance with the present invention. For example, a structure including a number of submicron- 
sized holes arranged in an optically active (e.g., a filtering or interfering) structure can be provided and temperature 
compensation can be accomplished using the fluorescent materials according to the present invention. 
[0045] In devices utilizing Mach-Zehnder devices or photon sieves in contact or filled with a fluid, the temperature 

35 effect on refractive index of the fluid can be corrected by utilizing the fluorescence reading. Another important aspect 
is the time dependence of the temperature drifts that are likely to be different from the kinetics of the events to be 
measured. The fluorescent materials of the present invention can be used to provide a real time correction of the 
temperature drifts in the fluid and compensate for the difference between the kinetics of the events being measured. 
[0046] In another aspect of the invention, a capillary or film containing at least one capillary can include the temper- 

40 ature dependent fluorescent materials of the present invention. For example, a thin coating (e.g., 20 microns or less) 
of a porous structure including the temperature sensitive coating can be provided. Alternatively, a porous membrane 
made from a suitable material, such as, for example, PMMA, can be filled with a temperature dependent fluorescent 
material. Either one of these structures can be utilized as a membrane for cell cultures and detection of a metabolic 
change in a cell such as a metastatic invasion, as the cell migrates through the capillary and the temperature of the 

45 capillary adjacent during migration is monitored. 

[0047] The process steps of the invention described above can be carried out using conventional equipment known 
in the art, e.g., equipment commonly found in a bioanalytical laboratory. For example, the principle of the present 
invention can be utilized with conventional analysis equipment to detect temperature changes associated with a change 
in fluorescence. Without intending to limit the invention in any manner, the present invention will be more fully described 

so by the following examples. 

EXAMPLES 

Example 1 

55 

EuTTA/PMMA Coating in Microplate Wells 

[0048] EuTTA and PMMA (polymethylmethacrylate) were dissolved in a highly volatile solvent. For example, 2% w/ 



8 



EP 1 262 764 A1 



w EuTTA, 2% w/w PMMA, and 96% w/w Methyl ethyl ketone (MEK) were mixed in a container. A 96 well microplate 
having a transparent polypropylene bottom (Corning, Inc. (catalog #9520), Corning, New York) was obtained, and an 
appropriate volume of the solution was deposited with a micropipette at the center of each plate well. To coat the bottom 
of a polypropylene plate with EuTTA/PMMA/MEK, approximately 15 uJ of solution was used. A film was formed by 
5 solvent evaporation at room temperature and pressure. The coated plate was UV cured (365nm, 1 J/cm 2 ) to stabilize 
the coating. 

Example 2 

10 Absorption Spectrum of EuTTA/PMMA Coating 

[0049] The absorption spectrum of the coating deposited on the microplate wells in Example 1 was measured every 
2 nm with a SpectraMax® Plus (Molecular Devices Corporation, Sunnyvale, California) UV/VIS microplate spectro- 
photometer. The absorption spectrum extended from 200 to 400 nm and showed a maximum at 346 nm. The emission 
15 spectrum ranged from 500 to 650 nm and showed a maximum at 614 nm. The absorption and emission spectra are 
shown in FIG. 3. 

Example 3 

20 Temperature Dependence of Fluorescence Signal from EuTTA/PMMA Coating 

[0050] The fluorescence signal emitted by the coating deposited in Example 1 was measured at different tempera- 
tures. The microplate was heated and the fluorescence was measured at an emission wavelength of 614 nm using a 
SpectraMax® Gemini (Molecular Devices Corporation) dual-scanning microplate spectrofluorometer at an excitation 
25 wavelength of 355 nm over a temperature range from about 25 °C and 34 °C. The results in FIG. 4 show an approximate 
3% decrease per °C for a 2% EuTTA/2% PMMA/96% MEK coating initial composition. 

Example 4 

30 Evaluation of the Limit of Detection 

[0051] To evaluate the limit of detection, a noise measurement was done using a bottom read set-up as shown in 
FIG. 2B using a Fluoroskan Ascent available from Labsystems. A microplate coated with EuTTA/PMMA was prepared 
in accordance with Example 1 . One column (8 wells) of the microplate was filled with water and a kinetic measurement 
35 was performed at temperatures ranging from 25 °C to 35 °C. For each temperature point, 50 fluorescence measure- 
ments were performed at 20 seconds intervals. A graph of the results is shown in FIG. 5. Signal drift and signal noise 
was calculated by assimilating signal drift to a straight line and calculating its slope. The slope was equal to -0.0073/°C. 
The fluorescent signal measured was corrected according to the following formula (corresponding to the slope observed 
on the curves): 

40 

Signal corrected =Signal raw + 0.0073 X Temperature 

[0052] The standard deviation of 50 data points was calculated to be 0.285. Knowing that the fluorescent signal 
45 varies 9.4241 units per degree centigrade, the noise and also the method sensitivity was calculated to be 0.285/9.4241 
or equal to 30 X 10 3 °C. 

Example 5 

so Terthiophene/PMMA Coating in Microplate Wells 

[0053] Terthiophene and PMMA (polymethylmethacrylate) were dissolved in a highly volatile solvent. For example, 
2% w/w terthiophene, 2% w/w PMMA, and 96% w/w Methyl ethyl ketone (MEK) were mixed in a container. A 96 well 
microplate having a transparent polypropylene bottom (Corning, Inc. (catalog #9520), Corning, New York) was ob- 
55 tained, and an appropriate volume of the solution was deposited with a micropipette at the center of each plate well. 
To coat the bottom of a polypropylene plate with EuTTA/PMMA/MEK, approximately 15 uJ of solution was used. A film 
was formed by solvent evaporation at room temperature and pressure. The coated plate was UV cured (365nm, 1 J/ 
cm2) to stabilize the coating. 



9 



EP 1 262 764 A1 



Example 6 

Temperature Dependence of Fluorescence Signal from Terthiophene/PMMA Coating 

5 [0054] The fluorescent signal emitted by the coating deposited in Example 5 was measured at an emission wave- 
length of 440 nm with an excitation wavelength of 355 nm over a temperature range from 30 °C to 38 °C. The results 
are shown in FIG. 7 and show an approximate 1 0% fluorescence signal increase per degree centigrade between about 
34 °C and 37 °C. 

[0055] Others dyes such as Rhodamine B and Erythrosin B were also used and showed that a change in fluorescence 
10 associated with a temperature change in a reaction chamber could be monitored. 

Example 7 

Detection of Chemical Reactions 

15 

[0056] To demonstrate the principle that the change in fluorescence of a fluorescent material could be used to detect 
a chemical reaction between two compounds, an experiment was performed with chemicals having known endothermic 
or exothermic dissolution behavior in water. 

[0057] First, eight wells of a 96 well microplate available from Corning, Inc., Corning, NY were coated with a solution 
20 of a EuTTA/PMMA in accordance with Example 1 above. The coated wells of the microplate were filled with 200 ul of 
water. KOH was added to seven of the eight coated wells, and one well was used as a reference well. The fluorescence 
signal from the wells was measured at an excitation wavelength of 355 nm and an emission wavelength of 614 nm 
over a 15 minute interval. FIG. 6 shows the temperature increase, represented by the change in fluorescence signal, 
due to the exothermic dissolution of KOH in water versus the reference well. A kinetic measurement monitoring the 
25 corresponding wells fluorescence signal with time was started immediately after the chemical addition at 25 °C. As 
expected, in case of an exothermic phenomenon, the signal decreases immediately and then goes back to its initial 
value, proving that the temperature increases due to the chemical addition and decreases progressively down to its 
initial value after the dissolution is complete. 

[0058] Similarly, with an endothermic phenomenon as shown in FIG. 9, the fluorescence signal was increasing due 
30 to the chemical addition and went back progressively to its initial value. For example, a 1 5% increase of signal was 
observed during the dissolution of 30 mg iodide potassium (Kl) in 200jil water. This example shows that it is possible 
to monitor and detect a chemical reaction between two compounds. 

Example 8 

35 

Detection of Metabolic Response in a Biomolecule 

[0059] To make in vitro cell culture, animal serum is usually added to the basic medium to provide to the cells nutri- 
ments and growth factor. A deprivation of this kind of serum leads to a slowing down of the cell metabolism. If serum 
40 is added after a deprivation period, the cell metabolism is reactivated and heat is generated. 

[0060] The present experiment detects the response, of CEM cells to serum addition in their culture medium after a 
serum deprivation period. 

[0061] The culture medium is prepared as follows (each component is provided by GibcoBRL Life Technologie): 

45 RPMI: 89.8% 

Veal Fetal Serum: 9% 

Antimycotic Antibiotic: 0.9% 

HEPES: 0.1% 

Sodium Pyruvate: 0.1% 
50 Glucose: 0.1% 

[0062] CEM cells are cultivated in the medium described above at 37 °C in an incubator with 5% of C0 2 atmosphere. 
Three to four hour before the beginning of the experiment, they are centrifuged and the medium is eliminated and 
replaced by a fresh one that does not contain any Veal Fetal Serum. The sample is divided in two parts of same volume: 
55 to the first one, veal fetal serum is added (these cells are not serum deprived) to reach 9% of serum in the total medium 
composition while to the second one, the same volume of medium (without veal fetal serum) is added. The two samples 
are put in the incubator again 3 to 4 hours. After this period of time, they are centrifuged, their media are eliminated 
and replaced by fresh media (with serum in the first case and without serum in the second case). They are counted 



10 



EP 1 262 764 A1 



and dispenses in the wells of a 384 well-microtiterplate (provided by Corning, Inc. reference 371 2). The total dispensed 
volume per well is 50 jal and the cells number per well is 10 6 . Some additional wells are filled with the culture medium 
only (some wells with the medium containing serum and some others with the medium without serum). The external 
side of the microtiterplate bottom was previously treated with a EuTTA/PMMA coating using the same composition and 

5 deposition method than in Example 1 . 

[0063] The microtiterplate is installed in a bottom read fluorometer (Fluoroskan Ascent) temperature regulated at 
37 C. The fluorescence signal from the wells is measured with the fluorometer for 190 seconds (one measurement 
every 10 seconds). Next, 40 |il of veal fetal serum at 37 °C is dispensed in every well, and the fluorescence signal 
from the wells is measured again (1 measurement every 10 seconds). 

io [0064] The fluorescence of the wells containing the serum deprived cells is expected to change after the serum 
injection while the fluorescence of the other wells (non deprived cells, medium with serum and medium without of 
serum) is not supposed to change, these later wells being the controls. 

[0065] As can be seen in Table 1, the kinetic analysis revealed that 10 minutes after the serum injection, a 1.1% 
fluorescence change is observed from the wells containing the serum deprived cells, meaning that a heat is generated 

15 in these wells and detected. On the other hand, at the same time, the fluorescence signal from the wells containing 
the control solutions have a value similar to this before serum injection, meaning that the addition of serum does not 
generate any heat in these wells. After this 1 0 minutes, fluorescence from the wells containing the deprived cells tends 
to slowly increase becoming closer and closer to its initial value (before serum injection). This is in accordance with a 
stabilization of the cells after they get enough serum to reactivate their metabolism. 

20 [0066] This result validates the use of temperature-dependent fluorescent coating to monitor cell metabolism acti- 
vation. 



25 



Table 1 





Fluorescence signal before serum injection 
(au.) 


Fluorescence signal 10 minutes after the 
serum injection (au.) 


Medium with serum 


1178±3 


1178±2 


Medium without serum 


1178+3 


1178*3 


Non deprived cells 


1178±2 


1178±3 


Serum deprived cells 


1176+2 


1163±3 



30 



35 



40 



[0067] It will be apparent to those skilled in the art that various modifications and variations can be made to the 
present invention without departing from the spirit or scope of the invention. For example, a variety of fluorescent 
materials and combinations of fluorescent materials that exhibit a changing fluorescence with changing temperature 
may be used in accordance with the present invention. For example, in addition to the fluorescent materials discussed 
in the specification, other fluorescent materials including, without limitation, Rhodamine B, Erythrosin B, and terthi- 
ophene can be used in accordance with the present invention. Thus, it is intended that the present invention cover 
modifications and variations of this invention provided they come within the scope of the appended claims and their 
equivalents. 



45 



50 



55 



Claims 

1 . A microplate for assaying samples comprising: 

a frame forming sidewalls of at least one well; and a bottom portion that forms a bottom of at least one well, 
the bottom portion including a fluorescent material in thermal communication with the at least one well. 

2. The microplate of claim 1 , wherein the fluorescence of the fluorescent material changes as the temperature of the 
at least one well changes. 

3. The microplate of claim 2, wherein fluorescent material is operative to produce a change in fluorescence sufficient 
to detect a chemical reaction, a biomolecular reaction, or a metabolic response of a cell. 

4. The microplate of claim 2, wherein the fluorescent material is in the form of a film forming a layer adjacent the 
bottom portion of the microplate. 



11 



EP 1 262 764 A1 

5. The microplate of claim 4, wherein the bottom portion of the microplate has a bottom surface, and the layer is on 
the bottom surface. 

6. The microplate of claim 2, wherein fluorescent material is embedded in the bottom portion of the microplate. 

5 

7. The microplate of claim 2, wherein the fluorescent material includes a rare-earth chelate. 

8. The microplate of claim 7, wherein the rare earth chelate is EuTTA. 

io 9. The microplate of claim 6, wherein the fluorescent material is selected from the group consisting of EuTTA, Rhod- 
amine B, Erythrosin B, terthiophene, and combinations thereof. 

10. The microplate of claim 5, wherein the layer is less than about 50 microns. 

is 11. A substrate including a biomolecule, a cell, or a cell fragment in contact with a surface of the substrate and a 
fluorescent material in thermal communication with a surface of the substrate, wherein the fluorescence of the 
fluorescent material changes with changing temperature. 

12. The substrate of claim 11, wherein the fluorescent material is selected from the group consisting of EuTTA, Rhod- 
es amine B, Erythrosin B, terthiopene and combinations thereof. 

13. The substrate of claim 11 , wherein the substrate includes a microarray of biomolecules, cells or cell fragments on 
a surface thereof. 

25 14. The substrate of claim 11, wherein the substrate comprises a porous structure including at least one capillary 
through which the biomolecule, cell or cell fragment migrates, and the temperature of the portion of the capillary 
adjacent the biomolecule, cell, or cell fragment is monitored. 

15. The substrate of claim 11, wherein the biomolecule is a cell, and the temperature of the portion of the capillary 
30 adjacent the cell is monitored to detect metabolic changes in the cell. 

16. A method of detecting a chemical reaction, a biomolecular reaction or a metabolic change in a cell comprising: 

providing a substrate including a fluorescent material, the fluorescence of which changes as the temperature 
35 of the fluorescent material changes; 

placing a chemical, a biomolecule, or a cell in contact with a second compound in or on the substrate; and 
monitoring the fluorescence of the fluorescent material. 

1 7. The method of claim 1 6, further comprising the step of correlating the fluorescence reading with a reaction between 
40 the biomolecule and the compound. 

18. A method of claim 17, further comprising the step of correlating involves comparing the light intensity of the fluo- 
rescent material with a change in temperature. 

45 19. The method of claim 16, wherein the substrate is a microplate, microfluidics device or a microarray chip incorpo- 
rating a fluorescent film. 

20. A method of screening biochemical assays comprising: 

so providing biochemical molecules in an array of locations; 

placing a compound in reactive contact with the biochemical molecules in at least one of the locations; 
detecting the temperature change in the at least of one of the locations by detecting the change in fluorescence 
of the locations. 

55 21. The method of claim 20, wherein at least one of the array of locations contains a fluorescent material, the fluores- 
cence of which changes with temperature. 

22. The method of claim 21, wherein the array of locations is provided on a microplate. 



12 



EP 1 262 764 A1 



23. The method of claim 21 , wherein the array of locations includes a microarray chip. 

24. A substrate including an array of locations, the substrate being suitable for use in a high-throughput screening of 
biomolecules or cells, the substrate including a fluorescent material, the fluorescence of which changes with tem- 

5 perature. 



25. A system for high-throughput screening of biomolecules or cells comprising: 

a sample holder including an array of locations, the sample holder including a fluorescent material, the fluo- 
10 rescence of which changes with temperature; 

means for contacting biomolecules or cells with a compound in at least one of the array of locations; and 
means for measuring the change in fluorescence of the fluorescent material as the temperature in at least one 
of the locations changes. 

15 26. An optical sensing system comprising: 

a substrate in contact with a fluid containing a biomolecule or a cell; 
a waveguide in association with the substrate; 
a light source; 
20 a light detector; and 

a fluorescent material in association with the substrate, the fluorescence of which changes with changing 
temperature. 

27. The optical sensing system of claim 26, wherein the waveguide includes a planar waveguide, a waveguide film, 
25 an optical fiber or a grating structure. 

28. The optical sensing system of claim 26, wherein the system includes a photon sieve or an interferometer. 

29. The optical sensing system of claim 27 further comprising a processor for determining temperature changes cor- 
30 responding to the changing in fluorescence. 

30. The optical sensing system of claim 29, wherein the processor is operative to receive an optical signal and correlate 
changes in temperature with changes in the refractive index of the substrate and/or the fluid. 

35 31 . The optical sensing system of claim 29, wherein the processor is operative to adjust the optical signal in accordance 
with the correlated change in refractive index of the fluid and/or the substrate. 

32. A method for analyzing substances proximate a sensing area of surface comprising: 

40 detecting a light signal generated proximate the sensing area; 

measuring the temperature proximate the sensing area; 
measuring the refractive index of the sensing area; and 

determining the change in refractive index of the sensing area due to the change in temperature and adjusting 
the light signal in accordance with the change in refractive index. 

45 

33. The method of claim 32, wherein the sensing area includes a substrate and a fluid in contact with the substrate. 

34. The method of claim 33, wherein the substrate is selected from the group consisting of a microplate, a microarray 
chip and a microfluidic chip. 

50 

35. The method of claim 33, wherein the fluid contains a cell or a biomolecule. 



36. The method of claim 35, wherein a fluorescent material having a temperature-dependent fluorescence is proximate 
the sensing area. 

55 

37. The method of claim 36, wherein the fluorescent material is selected from the group consisting of EuTTA, Rhod- 
amine B, Erythrosin B, terthiophene and combinations thereof. 



13 



EP 1 262 764 A1 

38. The method of claim 37, wherein the fluorescent material is embedded in the substrate. 

39. The method of claim 37, wherein the fluorescent material is in the form of a layer on a surface of the substrate. 

5 40. The method of claim 39, wherein the substrate is selected from the group consisting of a microplate, a microarray 
chip and a microfluidics chip. 

41. The method of claim 36, wherein the substrate includes at least one capillary, and the fluorescent material is 
adjacent the capillary. 

10 
15 
20 
25 
30 
35 
40 
45 
50 



14 



EP 1 262 764 A1 




15 



EP 1 262 764 A1 




16 



EP 1 262 764 A1 



FIG. 2C 




17 



EP 1 262 764 A1 




240 340 440 540 640 



Wavelength (nm) 



FIG. 3 



18 



EP 1 262 764 A1 



16000 



| 15000 
5 14000 
§, 13000 

CO 

2 12000 
c 

CD 

| 11000 
o 

i? 10000 



f 




y = 


-490.39X 4 


27644 








R 2 = 0.97 


53 











































25 



27 29 31 

Temperature (°C) 



33 



35 



FIG. 4 



19 



EP 1 262 764 A1 




Time (sec) 



FIG. 5 































y=-1l 


i-tEx 2 ■ 


4E-05 


x + 1.3 


333 














R 2 = 


: 0.999 


% 



















































































































































10 20 30 40 50 60 70 80 90 100 
Temperature 



fig. 6 



20 



EP 1 262 764 A1 



7 000 




Temperature (°C) 



FIG. 7 



dissolution of KOH in water 



15 000 



^ 13 000 




150 200 250 
Time (sec) 



350 



FIG. 8 



Dissolution of Kl in water 



17000 



- Reference 




500 



FIG. 9 



21 



EP 1 262 764 A1 



European Patent 
Office 



EUROPEAN SEARCH REPORT 



EP 01 40 1376 



DOCUMENTS CONSIDERED TO BE RELEVANT 



Category 



Citation of document with indication, where appropriate, 
of relevant passapes 



Relevant 
to claim 



CLASSIFICATION OF THE 
APPLICATION (lntCI.7) 



GB 2 333 153 A (UNIV ROCKEFELLER) 

14 July 1999 (1999-07-14) 

* page 5, line 7 - page 6, line 22; claims 
1-10 * 

* page 5, line 7 - page 6, line 22; claims 
1-10 * 

US 6 132 958 A (SIMON SANF0RD M) 
17 October 2000 (2000-10-17) 

* the whole document * 

WO 99 35496 A (NOVONORDISK AS) 

15 July 1999 (1999-07-15) 

* page 3, line 10-13 * 

* claims 1,5,9 * 

* page 11, line 4 - page 12, line 2 * 

* page 6, line 29 - page 7, line 6; 
figures 1,3,5 * 

* page 4, line 16-27; claims 1,5,9,14,15 * 

* page 6, line 11-17 * 

* page 13, line 10-16 * 

US 6 045 259 A (DJEU NICHOLAS I) 
4 April 2000 (2000-04-04) 

* claims 14.17 * 

US 5 738 825 A (PFEFFERK0RN ROLAND ET AL) 
14 April 1998 (1998-04-14) 

* the whole document * 

US 4 838 665 A (HASEGAWA SHINICHI ET AL) 
13 June 1989 (1989-06-13) 

* abstract ♦ 



The present search report has been drawn up for aP claims 



1-12, 
16-19 



13-15, 
24,25 

11.12. 
16-18 



20-23 



13-15, 
24,25 



26-31 



26-41 



26-41 



G01N21/77 
601N33/50 
G01N21/64 
B01L3/00 



TECHNICAL FIELDS 

(lnLCI.7) 



G01N 
BOIL 



Pteos of search' 

MUNICH 



Date ©I compteiion ot the search 

3 December 2001 



Examiner 

Vanmontfort, D 



CATEGORY OF CITED DOCUMENTS 



1 

o 



X : particularly relevant If taken alone 

Y : particularly relevant If combined with another 

document of the same category 
A : technological background 
O : non-written dtoctosure 
P : intermediate document 



T : theory or principle underlying the hventbn 
E : earlier patent document, but published on. or 

after the filing date 
D : document cited in the application 
L : document cited for other reasons 

& : member of the same patent family, corresponding 
document 



22 



EP 1 262 764 A1 




European Patent 
Office 



EP 01 40 1376 



Application Number 



CLAIMS INCURRING FEES 



The present European patent application comprised at the time of filing more than ten claims. 

□ Only part of the claims have been paid within the prescribed time limit. The present European search 
report has been drawn up for the first ten claims and for those claims for which claims fees have 
been paid, namely claim(s): 



□ No claims fees have been paid within the prescribed time limit The present European search report has 
been drawn up for the first ten claims. 



LACK OF UNITY OF INVENTION 



The Search Division considers that the present European patent application does not comply with the 
requirements of unity of invention and relates to several Inventions or groups of inventions, namely: 



see sheet B 



All further search fees have been paid within the fixed time limit. The present European search report has 
been drawn up for an claims. 



□ As all searchable claims could be searched without effort justifying an additional fee. the Search Division 
did not invite payment of any additional fee. 



□ Only part of the further search fees have been paid within the fixed time limit. The present European 
search report has been drawn up for those parts of the European patent application which relate to the 
inventions in respect of which search fees have been paid, namely claims: 



□ None of the further search fees have been paid within the fixed time limit The present European search 
report has been drawn up for those parts ol the European patent application which relate to the invention 
first mentioned in the claims, namely claims: 



23 



EP 1 262 764 A1 




European Patent 
Office 



LACK OF UNITY OF INVENTION 
SHEET B 



EP 01 40 1376 



Application 



Number 



The Search Division considers that the present European patent application does not comply with the 
requirements of unity of invention and relates to several inventions or groups of inventions, namely: 

1. Claims: 1-31, 36-41 

Systems, devices and methods of detecting reactions 
involving chemicals, blomolecules and metabolic changes 1n 
cells utilizing a temperature-sensitive fluorescent material. 



2. Claims: 32-35 

A method fori analyzing substances proximate a sensing area 
of surface by measuring the temperature and refractive Index 
of the sensing area. 



24 



EP 1 262 764 A1 



ANNEX TO THE EUROPEAN SEARCH REPORT 
ON EUROPEAN PATENT APPLICATION NO. 



EP 01 40 1376 



This annex lists the patent family members relating to the patent documents cited in the above-mentioned European search report. 
The members are as contained In the European Patent Office EDP file on 

The European Patent Office Is In no way liable for these particulars which are merely given for the purpose of information. 

03-12-2001 



Patent document 
cited in search report 



Publication 



Patent family 
member(s) 



Publication 
date 



GB 2333153 


A 


1 A n7_1 flnfl 

.14- u/— iyyy 


Ut 


1 OQfifil A1 


HE— HQ— 1 QQO 








IP 


1 1 ORQ1 £0 A 




US 6132958 


A 


17-10-2000 


GB 


2350892 A 


13-12-2000 








JP 


2001124768 A 


11-05-2001 


WO 9935496 


A 


15-07-1999 


AU 


1887299 A 


26-07-1999 








EP 


1047939 Al 


02-11-2000 








WO 


9935496 Al 


15-07-1999 


US 6045259 


A 


04-04-2000 


NONE 






US 5736825 


A 


14-04-1998 


DE 


69420375 Dl 


07-10-1999 








DE 


69420375 T2 


18-05-2000 








EP 


0660924 Al 


05-07-1995 








JP 


8504955 T 


28-05-1996 








MO 


9503538 Al 


02-02-1995 


US 4838665 


A 


13-06-1989 


JP 


63032501 A 


12-02-1988 








JP 


63032502 A 


12-02-1988 








JP 


63032503 A 


12-02-1988 








JP 


63032504 A 


12-02-1988 



Si For more details about this annex : see Official Journal of the European Patent Office, No. 12/82 



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